Uses of Enum Class
org.biojava.nbio.structure.io.density.DensityMapSource

Packages that use DensityMapSource

Package	Description
org.biojava.nbio.structure.io.density

Uses of DensityMapSource in org.biojava.nbio.structure.io.density

Fields in org.biojava.nbio.structure.io.density with type parameters of type DensityMapSource

Modifier and Type	Field	Description
static final List<DensityMapSource>	DensityMapCache.DEFAULT_EM_SOURCE_CHAIN	Order in which sources are tried for cryo-EM entries.
static final List<DensityMapSource>	DensityMapCache.DEFAULT_XRAY_SOURCE_CHAIN	Order in which sources are tried for X-ray and neutron entries.

Methods in org.biojava.nbio.structure.io.density that return DensityMapSource

Modifier and Type	Method	Description
DensityMapSource	DensityMapProvider.getSource()
DensityMapSource	DensityMapResult.getSource()
DensityMapSource	EmdbMapProvider.getSource()
DensityMapSource	PdbeCcp4MapProvider.getSource()
DensityMapSource	VolumeServerProvider.getSource()
DensityMapSource	VolumeServerProvider.Host.getSource()
DensityMapSource	WwpdbMapCoefficientsProvider.getSource()
static DensityMapSource	DensityMapSource.valueOf(String name)	Returns the enum constant of this class with the specified name.
static DensityMapSource[]	DensityMapSource.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in org.biojava.nbio.structure.io.density that return types with arguments of type DensityMapSource

Modifier and Type	Method	Description
Map<DensityMapSource,String>	NoDensityMapException.getAttempts()	What happened at each source, in the order they were tried.
List<DensityMapSource>	DensityMapCache.getSourceChain(DensityMapKind kind)	The order sources are tried in for a given kind of map.
List<DensityMapSource>	DensityMapRequest.getSourceChain()

Methods in org.biojava.nbio.structure.io.density with parameters of type DensityMapSource

Modifier and Type	Method	Description
static File	DensityCacheLayout.emdbMapFile(File cacheRoot, String emdbId, DensityMapSource source, DensityFileFormat format, String qualifier)	The cache file for an EMDB-keyed map.
DensityMapResult	DensityMapCache.getCached(PdbId pdbId, DensityMapKind kind, DensityMapSource source)	Looks a map up in the cache without contacting any server.
boolean	DensityMapCache.isSourceEnabled(DensityMapSource source)
static File	DensityCacheLayout.pdbMapFile(File cacheRoot, PdbId pdbId, String kindToken, DensityMapSource source, DensityFileFormat format, String qualifier)	The cache file for a PDB-keyed map, naming the kind explicitly.
static File	DensityCacheLayout.pdbMapFile(File cacheRoot, PdbId pdbId, DensityMapKind kind, DensityMapSource source, DensityFileFormat format, String qualifier)	The cache file for a PDB-keyed map.
void	DensityMapCache.setSourceEnabled(DensityMapSource source, boolean enabled)	Enables or disables a source.

Method parameters in org.biojava.nbio.structure.io.density with type arguments of type DensityMapSource

Modifier and Type	Method	Description
void	DensityMapCache.setSourceChain(DensityMapKind kind, List<DensityMapSource> chain)	Overrides the order sources are tried in.
DensityMapRequest.Builder	DensityMapRequest.Builder.sourceChain(List<DensityMapSource> chain)

Constructors in org.biojava.nbio.structure.io.density with parameters of type DensityMapSource

Modifier	Constructor	Description
	DensityMapResult(File file, DensityMapSource source, DensityFileFormat format, DensityMapKind kind, PdbId pdbId, String emdbId, String sourceUrl, boolean fromCache, Double recommendedContourLevel, Double sigma)

Constructor parameters in org.biojava.nbio.structure.io.density with type arguments of type DensityMapSource

Modifier	Constructor	Description
	NoDensityMapException(PdbId pdbId, DensityMapKind kind, Map<DensityMapSource,String> attempts)