Uses of Class
org.biojava.nbio.structure.io.density.DensityMapResult

Packages that use DensityMapResult

Package	Description
org.biojava.nbio.structure.io.density

Uses of DensityMapResult in org.biojava.nbio.structure.io.density

Methods in org.biojava.nbio.structure.io.density that return DensityMapResult

Modifier and Type	Method	Description
DensityMapResult	DensityMapProvider.fetch(DensityMapRequest request)	Fetches a map, using the cache if the request's fetch behaviour allows.
DensityMapResult	EmdbMapProvider.fetch(DensityMapRequest request)
DensityMapResult	PdbeCcp4MapProvider.fetch(DensityMapRequest request)
DensityMapResult	VolumeServerProvider.fetch(DensityMapRequest request)
DensityMapResult	WwpdbMapCoefficientsProvider.fetch(DensityMapRequest request)
DensityMapResult	DensityMapCache.getCached(PdbId pdbId, DensityMapKind kind, DensityMapSource source)	Looks a map up in the cache without contacting any server.
DensityMapResult	DensityMapCache.getDensityMap(String id, DensityMapKind kind)	Fetches a density map for a PDB or EMDB identifier.
DensityMapResult	DensityMapCache.getDensityMap(DensityMapRequest request)	Fetches a density map.
DensityMapResult	DensityMapCache.getDensityMap(PdbId pdbId, DensityMapKind kind)	Fetches a density map, using the cache where possible.
DensityMapResult	DensityMapCache.getDensityMap(Structure structure, DensityMapKind kind)	Fetches a density map for an already-loaded structure.
protected DensityMapResult	AbstractDensityMapProvider.obtain(DensityMapRequest request, URL url, File target, DensityMapKind kind, String emdbId, Double contourLevel, Double sigma)	Obtains a map, serving it from the cache when the fetch behaviour permits and downloading it otherwise.
static DensityMapResult	DensityMapResult.readMeta(File mapFile)	Reconstructs a result from a cached file and its metadata sidecar.

Methods in org.biojava.nbio.structure.io.density that return types with arguments of type DensityMapResult

Modifier and Type	Method	Description
Optional<DensityMapResult>	DensityMapCache.findDensityMap(PdbId pdbId, DensityMapKind kind)	As DensityMapCache.getDensityMap(PdbId, DensityMapKind) but returning an empty Optional rather than throwing when nothing is available.
List<DensityMapResult>	DensityMapCache.getDifferenceMapPair(PdbId pdbId)	Fetches both halves of the conventional X-ray pair: the 2mFo-DFc map and the mFo-DFc difference map.