Uses of Class
org.biojava.nbio.structure.io.density.DensityMapRequest

Packages that use DensityMapRequest

Package	Description
org.biojava.nbio.structure.io.density

Uses of DensityMapRequest in org.biojava.nbio.structure.io.density

Methods in org.biojava.nbio.structure.io.density that return DensityMapRequest

Modifier and Type	Method	Description
DensityMapRequest	DensityMapRequest.Builder.build()
DensityMapRequest	DensityMapRequest.withEmdbId(String newEmdbId)	Returns a copy of this request with the EMDB entry filled in.
DensityMapRequest	DensityMapRequest.withKind(DensityMapKind newKind)	Returns a copy of this request with a different map kind, used when expanding DensityMapKind.AUTO.

Methods in org.biojava.nbio.structure.io.density with parameters of type DensityMapRequest

Modifier and Type	Method	Description
String	VolumeServerProvider.buildUrl(DensityMapRequest request)	Builds the URL for a request without fetching it.
protected File	AbstractDensityMapProvider.effectiveCacheRoot(DensityMapRequest request)	The cache directory to use for a request, preferring the request's override.
protected LocalPDBDirectory.FetchBehavior	AbstractDensityMapProvider.effectiveFetchBehavior(DensityMapRequest request)	The effective fetch behaviour for a request, preferring the request's own setting over this provider's.
protected long	AbstractDensityMapProvider.effectiveMaxBytes(DensityMapRequest request)	The effective size limit for a request, preferring the request's own setting.
protected void	AbstractDensityMapProvider.enforceSizeLimit(URL url, long maxBytes, DensityMapRequest request)	Refuses a download whose declared size exceeds the limit, before any of the body is transferred.
DensityMapResult	DensityMapProvider.fetch(DensityMapRequest request)	Fetches a map, using the cache if the request's fetch behaviour allows.
DensityMapResult	EmdbMapProvider.fetch(DensityMapRequest request)
DensityMapResult	PdbeCcp4MapProvider.fetch(DensityMapRequest request)
DensityMapResult	VolumeServerProvider.fetch(DensityMapRequest request)
DensityMapResult	WwpdbMapCoefficientsProvider.fetch(DensityMapRequest request)
DensityMapResult	DensityMapCache.getDensityMap(DensityMapRequest request)	Fetches a density map.
protected DensityMapResult	AbstractDensityMapProvider.obtain(DensityMapRequest request, URL url, File target, DensityMapKind kind, String emdbId, Double contourLevel, Double sigma)	Obtains a map, serving it from the cache when the fetch behaviour permits and downloading it otherwise.
protected void	AbstractDensityMapProvider.reportTooLarge(URL url, long size, long maxBytes, DensityMapRequest request)	Announces that a map was skipped for being too large.