Uses of Enum Class
org.biojava.nbio.structure.io.density.DensityMapKind

Packages that use DensityMapKind

Package	Description
org.biojava.nbio.structure.io.density

Uses of DensityMapKind in org.biojava.nbio.structure.io.density

Methods in org.biojava.nbio.structure.io.density that return DensityMapKind

Modifier and Type	Method	Description
DensityMapKind	DensityMapRequest.getKind()
DensityMapKind	DensityMapResult.getKind()
DensityMapKind	NoDensityMapException.getKind()
static DensityMapKind	DensityMapKind.valueOf(String name)	Returns the enum constant of this class with the specified name.
static DensityMapKind[]	DensityMapKind.values()	Returns an array containing the constants of this enum class, in the order they are declared.

Methods in org.biojava.nbio.structure.io.density that return types with arguments of type DensityMapKind

Modifier and Type	Method	Description
List<DensityMapKind>	DensityMapKind.resolve()	Expands this kind into the concrete kinds to try, in order.

Methods in org.biojava.nbio.structure.io.density with parameters of type DensityMapKind

Modifier and Type	Method	Description
String	PdbeCcp4MapProvider.buildUrl(PdbId pdbId, DensityMapKind kind)	Builds the URL for a map without fetching it.
String	WwpdbMapCoefficientsProvider.buildUrl(PdbId pdbId, DensityMapKind kind)	Builds the URL for a set of coefficients without fetching them.
Optional<DensityMapResult>	DensityMapCache.findDensityMap(PdbId pdbId, DensityMapKind kind)	As DensityMapCache.getDensityMap(PdbId, DensityMapKind) but returning an empty Optional rather than throwing when nothing is available.
DensityMapResult	DensityMapCache.getCached(PdbId pdbId, DensityMapKind kind, DensityMapSource source)	Looks a map up in the cache without contacting any server.
DensityMapResult	DensityMapCache.getDensityMap(String id, DensityMapKind kind)	Fetches a density map for a PDB or EMDB identifier.
DensityMapResult	DensityMapCache.getDensityMap(PdbId pdbId, DensityMapKind kind)	Fetches a density map, using the cache where possible.
DensityMapResult	DensityMapCache.getDensityMap(Structure structure, DensityMapKind kind)	Fetches a density map for an already-loaded structure.
List<DensityMapSource>	DensityMapCache.getSourceChain(DensityMapKind kind)	The order sources are tried in for a given kind of map.
DensityMapRequest.Builder	DensityMapRequest.Builder.kind(DensityMapKind kind)
protected DensityMapResult	AbstractDensityMapProvider.obtain(DensityMapRequest request, URL url, File target, DensityMapKind kind, String emdbId, Double contourLevel, Double sigma)	Obtains a map, serving it from the cache when the fetch behaviour permits and downloading it otherwise.
static File	DensityCacheLayout.pdbMapFile(File cacheRoot, PdbId pdbId, DensityMapKind kind, DensityMapSource source, DensityFileFormat format, String qualifier)	The cache file for a PDB-keyed map.
static void	PdbeCcp4MapProvider.setPathUrlTemplate(DensityMapKind kind, String template)	Overrides the path template for a map kind.
static void	WwpdbMapCoefficientsProvider.setPathUrlTemplate(DensityMapKind kind, String template)	Overrides the path template for a map kind.
void	DensityMapCache.setSourceChain(DensityMapKind kind, List<DensityMapSource> chain)	Overrides the order sources are tried in.
boolean	AbstractDensityMapProvider.supports(DensityMapKind kind)
boolean	DensityMapProvider.supports(DensityMapKind kind)	Whether this provider can serve a given kind of map at all.
boolean	EmdbMapProvider.supports(DensityMapKind kind)
boolean	PdbeCcp4MapProvider.supports(DensityMapKind kind)
boolean	VolumeServerProvider.supports(DensityMapKind kind)
boolean	WwpdbMapCoefficientsProvider.supports(DensityMapKind kind)
DensityMapRequest	DensityMapRequest.withKind(DensityMapKind newKind)	Returns a copy of this request with a different map kind, used when expanding AUTO.

Constructors in org.biojava.nbio.structure.io.density with parameters of type DensityMapKind

Modifier	Constructor	Description
	DensityMapResult(File file, DensityMapSource source, DensityFileFormat format, DensityMapKind kind, PdbId pdbId, String emdbId, String sourceUrl, boolean fromCache, Double recommendedContourLevel, Double sigma)
	NoDensityMapException(PdbId pdbId, DensityMapKind kind, Map<DensityMapSource,String> attempts)