Uses of Class
org.biojava.nbio.structure.contact.StructureInterfaceCluster

Packages that use StructureInterfaceCluster

Package	Description
org.biojava.nbio.structure.contact

Uses of StructureInterfaceCluster in org.biojava.nbio.structure.contact

Methods in org.biojava.nbio.structure.contact that return StructureInterfaceCluster

Modifier and Type	Method	Description
StructureInterfaceCluster	StructureInterface.getCluster()

Methods in org.biojava.nbio.structure.contact that return types with arguments of type StructureInterfaceCluster

Modifier and Type	Method	Description
static <T> List<StructureInterfaceCluster>	StructureInterfaceList.clusterInterfaces(List<StructureInterfaceCluster> initialClusters, Function<StructureInterface,Pair<T>> idPairFunction, double contactOverlapScoreClusterCutoff)	Groups interface clusters further, merging any two whose representatives (first members) have a contact overlap score above the given cutoff.
List<StructureInterfaceCluster>	StructureInterfaceList.getClusters()	Calculate the interface clusters for this StructureInterfaceList using a contact overlap score to measure the similarity of interfaces.
List<StructureInterfaceCluster>	StructureInterfaceList.getClusters(double contactOverlapScoreClusterCutoff)	Calculate the interface clusters for this StructureInterfaceList using Jaccard contact set scores to measure the similarity of interfaces.
List<StructureInterfaceCluster>	StructureInterfaceList.getClustersNcs()	Get the interface clusters for this StructureInterfaceList grouped by NCS-equivalence.

Methods in org.biojava.nbio.structure.contact with parameters of type StructureInterfaceCluster

Modifier and Type	Method	Description
void	StructureInterface.setCluster(StructureInterfaceCluster cluster)

Method parameters in org.biojava.nbio.structure.contact with type arguments of type StructureInterfaceCluster

Modifier and Type	Method	Description
static <T> List<StructureInterfaceCluster>	StructureInterfaceList.clusterInterfaces(List<StructureInterfaceCluster> initialClusters, Function<StructureInterface,Pair<T>> idPairFunction, double contactOverlapScoreClusterCutoff)	Groups interface clusters further, merging any two whose representatives (first members) have a contact overlap score above the given cutoff.