Uses of Class
org.biojava.nbio.structure.contact.StructureInterface

Packages that use StructureInterface

Package	Description
org.biojava.nbio.structure.contact

Uses of StructureInterface in org.biojava.nbio.structure.contact

Fields in org.biojava.nbio.structure.contact with type parameters of type StructureInterface

Modifier and Type	Field	Description
static final Function<StructureInterface,Pair<Integer>>	StructureInterfaceList.ENTITY_ID_PAIR	Identifies each side of an interface by the entity id (EntityInfo.getMolId()) of its parent chain.

Methods in org.biojava.nbio.structure.contact that return StructureInterface

Modifier and Type	Method	Description
StructureInterface	StructureInterfaceList.get(int id)	Gets the interface corresponding to given id.

Methods in org.biojava.nbio.structure.contact that return types with arguments of type StructureInterface

Modifier and Type	Method	Description
List<StructureInterface>	StructureInterfaceList.getList()
List<StructureInterface>	StructureInterfaceCluster.getMembers()
Iterator<StructureInterface>	StructureInterfaceList.iterator()

Methods in org.biojava.nbio.structure.contact with parameters of type StructureInterface

Modifier and Type	Method	Description
void	StructureInterfaceList.add(StructureInterface interf)
boolean	StructureInterfaceCluster.addMember(StructureInterface interf)
void	StructureInterfaceList.addNcsEquivalent(StructureInterface interfaceNew, StructureInterface interfaceRef)	Add an interface to the list, possibly defining it as NCS-equivalent to an interface already in the list.
int	StructureInterface.compareTo(StructureInterface o)
double	StructureInterface.getContactOverlapScore(StructureInterface other, boolean invert)	Calculates the Jaccard contact set score (intersection over union) between this StructureInterface and the given one.

Method parameters in org.biojava.nbio.structure.contact with type arguments of type StructureInterface

Modifier and Type	Method	Description
static <T> List<StructureInterfaceCluster>	StructureInterfaceList.clusterInterfaces(List<StructureInterfaceCluster> initialClusters, Function<StructureInterface,Pair<T>> idPairFunction, double contactOverlapScoreClusterCutoff)	Groups interface clusters further, merging any two whose representatives (first members) have a contact overlap score above the given cutoff.
void	StructureInterfaceCluster.setMembers(List<StructureInterface> members)