Package demo

Class DemoShowElectronDensity

java.lang.Object
demo.DemoShowElectronDensity
public class DemoShowElectronDensity extends Object
Shows 1CBS with its electron density drawn around the bound retinoic acid.

Both maps are displayed: the 2mFo-DFc map in blue at 1 sigma, which should hug the ligand closely, and the mFo-DFc difference map as a red and green pair at 3 sigma, which for a well refined structure should show very little.

Once the window is up, the map can be manipulated from the Rasmol command box at the bottom, for instance 

 isosurface ID "bj_density_2fofc" delete
to remove just the blue surface. Pressing Reset Display keeps the maps, since they are folded into the saved state when they are drawn.
Since:
7.3.0
Author:
Amr ALHOSSARY

  • Constructor Details

    • DemoShowElectronDensity

      public DemoShowElectronDensity()

  • Method Details

    • main

      public static void main(String[] args) throws Exception
      Parameters:
      args - an optional PDB ID to display instead of the default
      Throws:
      Exception - if the structure or the map could not be fetched