Package org.biojava.nbio.core.util

package org.biojava.nbio.core.util

Class	Description
ConcurrencyTools	Static utility to easily share a thread pool for concurrent/parallel/lazy execution.
CRC64Checksum	Utility class that calculates a CRC64 checksum on a stream of bytes.
Equals	A set of helper methods which return true if the two parameters are equal to each other.
FileDownloadUtils
FileDownloadUtils.ETagPolicy	What to do with the ETag response header when no explicit hash URL is available.
FileDownloadUtils.Hash
FlatFileCache	Provides a cache for storing multiple small files in memory.
Hashcoder	Contains helper methods for generating a HashCode without having to resort to the commons lang hashcode builders.
HttpStatusException	Signals that an HTTP request completed but returned a status code outside the 2xx range.
InputStreamProvider	A class that provides an InputStream from a File.
PrettyXMLWriter	Implementation of XMLWriter which emits nicely formatted documents to a PrintWriter.
SequenceTools
SingleLinkageClusterer	An implementation of a single linkage clusterer See http://en.wikipedia.org/wiki/Single-linkage_clustering
SoftHashMap<K,V>	An in memory cache using soft references.
StringManipulationHelper	A utility class for common String manipulation tasks.
UncompressInputStream	This class decompresses an input stream containing data compressed with the unix "compress" utility (LZC, a LZW variant).
XMLHelper	Helper methods to simplify boilerplate XML parsing code for org.w3c.dom XML objects
XMLWriter	Simple interface for building XML documents.